STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM4SF5Transmembrane 4 L six family member 5. (195 aa)    
Predicted Functional Partners:
LRCH4
Leucine rich repeats and calponin homology domain containing 4.
      
 0.589
GLYCTK
Glycerate kinase.
      
 0.569
TMEM74
Transmembrane protein 74.
      
 0.567
TSPAN1
Tetraspanin.
      
 0.517
CDHR1
Cadherin related family member 1.
   
  
 0.512
C11orf54
Chromosome 11 open reading frame 54.
      
 0.508
VSTM5
V-set and transmembrane domain containing 5.
      
 0.464
TM4SF20
Transmembrane 4 L six family member 20.
   
  
 0.432
SLC38A9
Solute carrier family 38 member 9.
   
 
 0.423
RSPH9
Radial spoke head 9 homolog.
      
 0.418
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.