Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCAR1Cell division cycle and apoptosis regulator 1. (1147 aa)    
Predicted Functional Partners:
PRPF40A
Pre-mRNA processing factor 40 homolog A.
   
  0.901
RBM10
RNA binding motif protein 10.
   
 0.868
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.827
G3TV31_LOXAF
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.827
U2SURP
U2 snRNP associated SURP domain containing.
   
  
 0.788
TCERG1
Transcription elongation regulator 1.
   
 
  0.785
CA7
Carbonic anhydrase 7; Belongs to the alpha-carbonic anhydrase family.
    
 
 0.744
CA10
Carbonic anhydrase 10; Belongs to the alpha-carbonic anhydrase family.
    
 
 0.726
FGFRL1
Fibroblast growth factor receptor like 1.
   
  
 0.703
FHL3
Four and a half LIM domains 3.
    
   0.702
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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