STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTP4A3Protein tyrosine phosphatase 4A3. (173 aa)    
Predicted Functional Partners:
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.623
PIM3
Protein kinase domain-containing protein.
      
 0.570
BCAR1
BCAR1 scaffold protein, Cas family member.
    
 
 0.517
RAB7B
RAB7B, member RAS oncogene family.
   
  
 0.515
RAB38
RAB38, member RAS oncogene family.
      
 0.505
WBP11
Uncharacterized protein.
      
 0.495
TOMM20L
Translocase of outer mitochondrial membrane 20 like.
      
 0.494
TOMM20
Translocase of outer mitochondrial membrane 20.
      
 0.494
G3TVY9_LOXAF
PDEase domain-containing protein.
   
  
 0.461
GADD45G
Growth arrest and DNA damage inducible gamma.
      
 0.408
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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