RAB19 protein (Loxodonta africana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RAB19

RAB19, member RAS oncogene family. (217 aa)

Predicted Functional Partners:

USP6NL

0.851

RABGGTB

0.722

USO1

0.630

CHM

0.621

TRAPPC1

0.619

TRAPPC4

0.618

STX5

0.616

TRAPPC8

0.612

TRAPPC5

0.607

VPS33A

0.603

Your Current Organism:

Loxodonta africana

NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHM	RAB19	ENSLAFP00000000437	ENSLAFP00000005232	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB19, member RAS oncogene family.	0.621
CHM	RABGGTB	ENSLAFP00000000437	ENSLAFP00000002585	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.978
CHM	TRAPPC1	ENSLAFP00000000437	ENSLAFP00000000444	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.623
CHM	TRAPPC4	ENSLAFP00000000437	ENSLAFP00000014352	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.428
CHM	TRAPPC5	ENSLAFP00000000437	ENSLAFP00000004909	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.430
CHM	TRAPPC8	ENSLAFP00000000437	ENSLAFP00000007439	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Trafficking protein particle complex 8.	0.517
RAB19	CHM	ENSLAFP00000005232	ENSLAFP00000000437	RAB19, member RAS oncogene family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.621
RAB19	RABGGTB	ENSLAFP00000005232	ENSLAFP00000002585	RAB19, member RAS oncogene family.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.722
RAB19	STX5	ENSLAFP00000005232	ENSLAFP00000019690	RAB19, member RAS oncogene family.	Syntaxin 5; Belongs to the syntaxin family.	0.616
RAB19	TRAPPC1	ENSLAFP00000005232	ENSLAFP00000000444	RAB19, member RAS oncogene family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.619
RAB19	TRAPPC4	ENSLAFP00000005232	ENSLAFP00000014352	RAB19, member RAS oncogene family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.618
RAB19	TRAPPC5	ENSLAFP00000005232	ENSLAFP00000004909	RAB19, member RAS oncogene family.	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.607
RAB19	TRAPPC8	ENSLAFP00000005232	ENSLAFP00000007439	RAB19, member RAS oncogene family.	Trafficking protein particle complex 8.	0.612
RAB19	USO1	ENSLAFP00000005232	ENSLAFP00000001491	RAB19, member RAS oncogene family.	USO1 vesicle transport factor.	0.630
RAB19	USP6NL	ENSLAFP00000005232	ENSLAFP00000014436	RAB19, member RAS oncogene family.	USP6 N-terminal like.	0.851
RAB19	VPS33A	ENSLAFP00000005232	ENSLAFP00000013822	RAB19, member RAS oncogene family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.603
RABGGTB	CHM	ENSLAFP00000002585	ENSLAFP00000000437	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.978
RABGGTB	RAB19	ENSLAFP00000002585	ENSLAFP00000005232	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	RAB19, member RAS oncogene family.	0.722
STX5	RAB19	ENSLAFP00000019690	ENSLAFP00000005232	Syntaxin 5; Belongs to the syntaxin family.	RAB19, member RAS oncogene family.	0.616
STX5	TRAPPC1	ENSLAFP00000019690	ENSLAFP00000000444	Syntaxin 5; Belongs to the syntaxin family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.647

page 1 of 3

Server load: low (38%) [HD]

Permalink

Network

Co-occurrence

Experiments

Co-expression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About