STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASTCalpastatin. (728 aa)    
Predicted Functional Partners:
CAPN1
Calpain 1; Belongs to the peptidase C2 family.
   
 0.813
CAPN2
Calpain 2; Belongs to the peptidase C2 family.
   
 0.739
CAPNS1
Calpain small subunit 1.
   
 0.682
CAPNS2
Calpain small subunit 2.
   
 0.682
CAPN10
Calpain 10; Belongs to the peptidase C2 family.
   
 0.670
CAPN9
Calpain 9; Belongs to the peptidase C2 family.
   
 0.663
CAPN3
Calpain 3; Belongs to the peptidase C2 family.
   
 0.663
CAPN8
Calpain 8; Belongs to the peptidase C2 family.
   
 0.646
G3TGT3_LOXAF
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
   
 0.646
CAPN15
Calpain 15; Belongs to the peptidase C2 family.
   
 0.630
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.