STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAP1Ubiquitin carboxyl-terminal hydrolase. (729 aa)    
Predicted Functional Partners:
ASXL2
ASXL transcriptional regulator 2.
   
 0.997
ASXL1
ASXL transcriptional regulator 1.
   
 0.993
BARD1
BRCA1 associated RING domain 1.
    
 0.968
OGT
O-linked N-acetylglucosamine (GlcNAc) transferase.
    
 0.968
ASXL3
ASXL transcriptional regulator 3.
   
 0.949
UBE2O
Uncharacterized protein.
    
 0.940
HCFC2
Host cell factor C2.
    
 0.938
HCFC1
Host cell factor C1.
    
 0.938
KDM1B
Lysine demethylase 1B.
   
 0.915
ADRM1
Adhesion regulating molecule 1.
    
 0.880
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.