STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF7PHD finger protein 7. (382 aa)    
Predicted Functional Partners:
TCEAL1
Transcription elongation factor A like 1.
    
   0.802
USP7
Ubiquitin specific peptidase 7; Belongs to the peptidase C19 family.
   
 
 0.793
USP11
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
    
 
 0.615
CYLC2
Cylicin_N domain-containing protein.
   
 0.612
ATF7IP
Activating transcription factor 7 interacting protein.
   
 0.605
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.560
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.555
SRGAP3
SLIT-ROBO Rho GTPase activating protein 3.
      
 0.496
PLAAT5
Phospholipase A and acyltransferase 5.
      
 0.488
EP300
E1A binding protein p300.
   
 0.475
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.