STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD5Chromodomain helicase DNA binding protein 5. (1928 aa)    
Predicted Functional Partners:
GATAD2B
GATA zinc finger domain containing 2B.
   
 0.781
GATAD2A
GATA zinc finger domain containing 2A.
   
 0.757
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.736
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.736
ARID4A
AT-rich interaction domain 4A.
    
 0.705
ARID4B
AT-rich interaction domain 4B.
    
 0.705
MBD2
Methyl-CpG binding domain protein 2.
    
 0.684
MBD3
Methyl-CpG binding domain protein 3.
    
 0.684
NYNRIN
NYN domain and retroviral integrase containing.
   
 0.678
MTA2
Metastasis associated 1 family member 2.
   
 0.667
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.