STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERINC1Serine incorporator 1. (453 aa)    
Predicted Functional Partners:
SERINC5
Serine incorporator 5.
    
 0.801
PMS2
PMS1 homolog 2, mismatch repair system component.
 
      0.672
SERINC4
Serine incorporator 4.
    
 0.617
ATG9A
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
      
 0.602
RUSC2
RUN and SH3 domain containing 2.
      
 0.598
RUSC1
RUN and SH3 domain containing 1.
      
 0.597
AP4S1
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
      
 0.592
DAGLB
Lipase_3 domain-containing protein.
      
 0.585
TEPSIN
TEPSIN adaptor related protein complex 4 accessory protein.
      
 0.582
AP4E1
Adaptor related protein complex 4 subunit epsilon 1.
      
 0.580
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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