STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GTF2IRD1GTF2I repeat domain containing 1. (936 aa)    
Predicted Functional Partners:
CLIP2
CAP-Gly domain containing linker protein 2.
 
    
 0.655
GDF10
Bone morphogenetic protein 3; Belongs to the TGF-beta family.
      
 0.542
NSUN5
NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.521
SORCS1
Sortilin related VPS10 domain containing receptor 1.
    
 
 0.520
RFC2
Replication factor C subunit 2.
      
 0.517
TBL2
Transducin beta like 2.
      
 0.473
CNGA3
Cyclic nucleotide gated channel subunit alpha 3.
      
 0.452
PDE6C
Phosphodiesterase.
      
 0.452
TMEM132E
Transmembrane protein 132E.
      
 0.448
FKBP6
Peptidylprolyl isomerase.
      
 0.447
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.