STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WACWW domain containing adaptor with coiled-coil. (646 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.952
RNF40
E3 ubiquitin protein ligase; Belongs to the BRE1 family.
   
 0.793
RNF20
E3 ubiquitin protein ligase; Belongs to the BRE1 family.
   
 0.776
CDC5L
Cell division cycle 5 like.
   
 
 0.702
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.657
PRPF39
Pre-mRNA processing factor 39.
    
 
 0.650
RBM25
PWI domain-containing protein.
   
 
 0.643
G3UCI8_LOXAF
Uncharacterized protein.
   
 
 0.643
SF3B2
Splicing factor 3b subunit 2.
   
 
 0.640
SF3B3
Splicing factor 3b subunit 3.
    
 
 0.621
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.