Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX19BDEAD-box helicase 19B. (479 aa)    
Predicted Functional Partners:
NUP214
Nucleoporin 214.
    
 
 0.739
NUP88
Nucleoporin 88.
    
 
 0.701
CTIF
Cap binding complex dependent translation initiation factor.
    
   0.685
GLE1
GLE1 RNA export mediator.
    
 
 0.681
DDX25
DEAD-box helicase 25.
    
   0.666
XPO1
Exportin 1.
    
 
 0.594
ZC3H14
Zinc finger CCCH-type containing 14.
   
 
 0.516
NUP62
Nucleoporin 62.
   
 
 0.501
DDX51
DEAD-box helicase 51; Belongs to the DEAD box helicase family.
  
0.492
FCSK
Fucose kinase.
      
 0.490
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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