STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM6RNA binding motif protein 6. (986 aa)    
Predicted Functional Partners:
SUGP1
SURP and G-patch domain containing 1.
   
 0.915
PPP1R8
Protein phosphatase 1 regulatory subunit 8.
   
 
 0.780
HTATSF1
HIV-1 Tat specific factor 1.
   
 
 0.763
DHX15
DEAH-box helicase 15.
   
 0.757
DDX5
DEAD-box helicase 5; Belongs to the DEAD box helicase family.
   
 0.746
TCERG1
Transcription elongation regulator 1.
   
 0.744
U2SURP
U2 snRNP associated SURP domain containing.
   
 
 0.743
CDC40
Cell division cycle 40.
   
 
 0.741
DNAJC8
DnaJ heat shock protein family (Hsp40) member C8.
   
 
  0.736
SF3B4
Splicing factor 3b subunit 4.
    
 
 0.736
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.