STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAT4FAT atypical cadherin 4. (4981 aa)    
Predicted Functional Partners:
VANGL2
Vang-like protein.
    
 0.705
CTNNB1
Catenin beta 1.
    
 0.658
FJX1
Four-jointed box kinase 1.
   
 
 0.653
PLB1
Phospholipase B1.
      
 0.624
JUP
Junction plakoglobin.
    
 0.608
RHOV
Ras homolog family member V.
    
 0.570
INVS
Inversin.
   
 0.564
APOB
Apolipoprotein B.
   
  
 0.550
PCDH15
Protocadherin related 15.
   
0.520
CDHR5
Cadherin related family member 5.
   
0.520
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.