STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMDT1Single-pass membrane protein with aspartate rich tail 1. (107 aa)    
Predicted Functional Partners:
MICU1
Mitochondrial calcium uptake 1.
    
 0.996
MCU
Mitochondrial calcium uniporter.
    
 0.995
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.993
MICU2
Mitochondrial calcium uptake 2.
    
 0.987
MICU3
Mitochondrial calcium uptake family member 3.
    
 0.974
ATP5F1D
ATP synthase F1 subunit delta.
   
    0.880
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
     
 0.857
EDF1
Endothelial differentiation related factor 1.
   
    0.821
AFG3L2
AFG3 like matrix AAA peptidase subunit 2.
     
 0.736
LOC100660900
AAA domain-containing protein.
     
 0.736
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.