STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABGEF1Uncharacterized protein. (491 aa)    
Predicted Functional Partners:
RABEP1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.991
RABEP2
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.963
RAB5A
RAB5A, member RAS oncogene family.
   
 0.918
RAB17
RAB17, member RAS oncogene family.
   
 0.918
RAB5B
RAB5B, member RAS oncogene family.
   
 0.918
G3UI34_LOXAF
Uncharacterized protein.
   
 0.918
RAB24
RAB24, member RAS oncogene family.
   
 0.912
GGA1
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
   
 0.905
RAB22A
RAB22A, member RAS oncogene family.
   
 0.899
RAB20
RAB20, member RAS oncogene family.
   
 0.898
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.