STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C9orf40Chromosome 9 open reading frame 40. (191 aa)    
Predicted Functional Partners:
G3UIP9_LOXAF
ATP-grasp domain-containing protein.
     
 0.902
CNDP2
Carnosine dipeptidase 2.
     
 0.888
CNDP1
Carnosine dipeptidase 1.
     
 0.834
MIOS
Meiosis regulator for oocyte development.
    
 0.715
SEH1L
SEH1 like nucleoporin; Belongs to the WD repeat SEC13 family.
   
 0.695
DEPDC5
DEP domain-containing protein.
    
 0.578
UXS1
UDP-glucuronate decarboxylase 1.
    
   0.575
C18orf54
Chromosome 18 open reading frame 54.
      
 0.566
CCDC150
Coiled-coil domain containing 150.
      
 0.561
HNMT
Histamine N-methyltransferase.
     
 0.548
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.