STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD1Homocysteine inducible ER protein with ubiquitin like domain 1. (423 aa)    
Predicted Functional Partners:
SYVN1
Synoviolin 1.
   
 0.968
AMFR
Autocrine motility factor receptor.
   
 
 0.942
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 0.799
DNAJB9
DnaJ heat shock protein family (Hsp40) member B9.
   
  
 0.786
UBA6
Ubiquitin like modifier activating enzyme 6.
      
 0.664
FAM8A1
Family with sequence similarity 8 member A1.
    
 0.625
RNF165
RING-type domain-containing protein.
      
 0.618
ATF4
Activating transcription factor 4.
   
 
 0.610
ZNF622
Zinc finger protein 622.
      
 0.594
HSPA5
Heat shock protein family A (Hsp70) member 5; Belongs to the heat shock protein 70 family.
   
 
 0.584
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.