STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD1Homocysteine inducible ER protein with ubiquitin like domain 1. (423 aa)    
Predicted Functional Partners:
SYVN1
Synoviolin 1.
   
 
 0.656
AMFR
Autocrine motility factor receptor.
   
 
 0.639
ZNF622
Zinc finger protein 622.
      
 0.537
ATF4
Activating transcription factor 4.
   
 
 0.526
MANF
Mesencephalic astrocyte derived neurotrophic factor.
      
 0.524
CTH
Cystathionine gamma-lyase.
      
 0.476
UBA6
Ubiquitin like modifier activating enzyme 6.
      
 0.457
ERO1B
Endoplasmic reticulum oxidoreductase 1 beta.
      
 0.441
DNAJB9
DnaJ heat shock protein family (Hsp40) member B9.
   
  
 0.441
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.434
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.