STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF1Splicing factor 1. (645 aa)    
Predicted Functional Partners:
SF3A2
Splicing factor 3a subunit 2.
   
 0.981
DDX46
DEAD-box helicase 46.
   
 0.963
SF3A3
Splicing factor 3a subunit 3.
   
 0.955
CDC5L
Cell division cycle 5 like.
   
 
 0.953
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.927
G3TV31_LOXAF
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.927
PRPF40B
Pre-mRNA processing factor 40 homolog B.
    
 
 0.902
SF3A1
Uncharacterized protein.
   
 0.887
G3TTS0_LOXAF
Uncharacterized protein.
   
 0.887
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
   
 
 0.865
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.