Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
USP40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1237 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.828
YTHDC1
YTH domain containing 1.
   
  
 0.784
UVSSA
UV stimulated scaffold protein A.
    
 0.771
GMPS
Guanine monophosphate synthase.
   
 
 0.767
DAXX
Death domain associated protein.
    
 0.732
DNAJB3
J domain-containing protein.
   
 
 0.715
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.683
VCPIP1
Valosin containing protein interacting protein 1.
   
 
 0.647
UBB
Ubiquitin B.
   
 0.643
UBC
Uncharacterized protein.
   
 0.643
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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