STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USE1Unconventional SNARE in the ER 1. (275 aa)    
Predicted Functional Partners:
STX18
Syntaxin 18.
   
 0.999
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
    
 0.993
BNIP1
Uncharacterized protein.
    
 0.989
RINT1
RAD50 interactor 1.
    
 0.982
SNX15
Sorting nexin 15.
    
 0.976
RPS6KC1
Ribosomal protein S6 kinase C1.
    
 0.976
ZW10
Zw10 kinetochore protein.
    
 0.972
G3TVF4_LOXAF
Uncharacterized protein.
    
 0.949
NBAS
Sec39 domain-containing protein.
    
 0.931
G3U4J3_LOXAF
Nbas_N domain-containing protein.
    
 0.931
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.