STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DBX1Developing brain homeobox 1. (344 aa)    
Predicted Functional Partners:
HOXA2
Homeobox A2.
    
 
 0.578
ATOH1
Atonal bHLH transcription factor 1.
      
 0.565
IRX3
Iroquois homeobox 3.
   
 
 0.564
HTATIP2
HIV-1 Tat interactive protein 2.
   
  
 0.506
LMX1A
LIM homeobox transcription factor 1 alpha.
    
 0.504
LMX1B
LIM homeobox transcription factor 1 beta.
    
 0.504
OLIG3
Oligodendrocyte transcription factor 3.
   
  
 0.503
SEMA3C
Semaphorin 3C; Belongs to the semaphorin family.
      
 0.498
TAL2
TAL bHLH transcription factor 2.
    
 
 0.493
PRMT3
Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
      
 0.490
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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