STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRRX1Paired related homeobox 1. (245 aa)    
Predicted Functional Partners:
ARX
Aristaless related homeobox.
   
 
 0.847
SRF
Serum response factor.
    
 0.727
COL6A2
Collagen type VI alpha 2 chain.
   
 
 0.704
TIMP2
TIMP metallopeptidase inhibitor 2.
   
  
 0.703
FKBP10
Peptidylprolyl isomerase.
   
  
 0.702
THBS1
Thrombospondin 1.
   
 0.695
VGLL3
Vestigial like family member 3.
      
 0.674
G3T5N3_LOXAF
Uncharacterized protein.
   
 
 0.666
POSTN
Periostin.
   
  
 0.662
TWIST2
Twist family bHLH transcription factor 2.
   
 
 0.661
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.