STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX4Sorting nexin 4. (405 aa)    
Predicted Functional Partners:
SNX30
Sorting nexin family member 30.
   
 0.931
SNX7
Sorting nexin 7.
   
 0.917
SNX1
Sorting nexin 1.
   
 
 0.904
SNX2
Sorting nexin 2.
   
 
 0.891
SNX5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.852
SNX6
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.766
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
     
 0.754
SERPINE2
Serpin family E member 2; Belongs to the serpin family.
      
 0.737
VPS26B
VPS26, retromer complex component B.
   
 
 0.736
NUDCD3
NudC domain containing 3.
    
  0.725
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.