STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DCP1BDecapping mRNA 1B. (415 aa)    
Predicted Functional Partners:
DCP2
Decapping mRNA 2.
    
 0.995
EDC3
Enhancer of mRNA decapping 3.
   
 0.994
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
   
 0.994
DCP1A
Decapping mRNA 1A.
 
  
 0.992
EDC4
Enhancer of mRNA decapping 4.
    
 0.987
PIM1
Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.
    
   0.927
XRN1
5'-3' exoribonuclease 1.
    
 0.913
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.827
LSM14A
LSM14A mRNA processing body assembly factor.
   
 
 0.796
BAG4
BCL2 associated athanogene 4.
    
 
 0.788
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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