STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAD23BRAD23 homolog B, nucleotide excision repair protein. (387 aa)    
Predicted Functional Partners:
XPC
XPC complex subunit, DNA damage recognition and repair factor.
   
 0.995
NGLY1
N-glycanase 1.
    
 0.993
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
   
 0.988
XPA
XPA, DNA damage recognition and repair factor.
    
 0.985
PSMC1
Proteasome 26S subunit, ATPase 1; Belongs to the AAA ATPase family.
   
 0.977
PSMD14
Proteasome 26S subunit, non-ATPase 14.
   
 0.965
PSMD4
Proteasome 26S subunit, non-ATPase 4.
   
 0.964
ERCC2
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.958
PSMC2
Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.
   
 0.956
ATXN3
Josephin domain-containing protein.
    
 0.955
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.