STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GIN1Gypsy retrotransposon integrase 1. (522 aa)    
Predicted Functional Partners:
FANCM
FA complementation group M.
   
 0.795
PGBD5
PiggyBac transposable element derived 5.
   
 
 0.763
THAP9
THAP domain containing 9.
    
 0.702
EFCAB2
EF-hand calcium binding domain 2.
   
 
 0.700
PGBD1
PiggyBac transposable element derived 1.
    
 0.663
ZNF862
Zinc finger protein 862.
    
 0.640
POGK
Pogo transposable element derived with KRAB domain.
      
 0.615
NAIF1
Nuclear apoptosis inducing factor 1.
   
  
 0.567
UBXN8
UBX domain protein 8.
      
 0.564
ZBED1
Zinc finger BED-type containing 1.
   
  
 0.564
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.