STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GIN1Gypsy retrotransposon integrase 1. (522 aa)    
Predicted Functional Partners:
PGBD5
PiggyBac transposable element derived 5.
   
 
 0.822
THAP9
THAP domain containing 9.
    
 0.761
PGBD1
PiggyBac transposable element derived 1.
    
 0.745
HARBI1
Harbinger transposase derived 1.
      
 0.737
SUGP2
SURP and G-patch domain containing 2.
      
 0.723
CGGBP1
CGG triplet repeat binding protein 1.
    
 0.722
EFCAB2
EF-hand calcium binding domain 2.
   
 
 0.715
ZNF862
Zinc finger protein 862.
    
 0.713
POGK
Pogo transposable element derived with KRAB domain.
      
 0.689
G3UJV5_LOXAF
Uncharacterized protein.
    
  0.676
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.