STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABT1Activator of basal transcription 1. (275 aa)    
Predicted Functional Partners:
RRP36
Ribosomal RNA processing 36.
   
 
 0.987
DDX49
DEAD-box helicase 49; Belongs to the DEAD box helicase family.
   
 
 0.979
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.977
DDX10
RNA helicase.
   
 
 0.973
BYSL
Bystin like.
   
 
 0.967
UTP25
UTP25 small subunit processor component.
   
 
 0.965
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.962
UTP6
UTP6 small subunit processome component.
   
 
 0.960
NOP14
NOP14 nucleolar protein.
   
 
 0.956
DHX15
DEAH-box helicase 15.
   
 
 0.952
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.