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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARMC3Armadillo repeat containing 3. (640 aa)    
Predicted Functional Partners:
C9orf116
Chromosome 9 open reading frame 116.
   
 
 0.823
EFCAB1
EF-hand calcium binding domain 1.
   
 
 0.814
IQUB
IQ motif and ubiquitin domain containing.
   
 
 0.745
C4orf47
Chromosome 4 open reading frame 47.
   
  
 0.734
G3U5R6_LOXAF
Uncharacterized protein.
   
 
 0.665
TEKT3
Tektin 3.
   
 
 0.662
TTC25
Tetratricopeptide repeat domain 25.
   
 
 0.628
G3TC70_LOXAF
Uncharacterized protein.
    
 
 0.585
CCDC96
DUF4201 domain-containing protein.
   
  
 0.585
CCDC189
Coiled-coil domain containing 189.
      
 0.581
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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