STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARMC3Armadillo repeat containing 3. (640 aa)    
Predicted Functional Partners:
C9orf116
Chromosome 9 open reading frame 116.
   
 
 0.895
EFCAB1
EF-hand calcium binding domain 1.
   
 
 0.891
C4orf47
Chromosome 4 open reading frame 47.
    
 
 0.888
IQUB
IQ motif and ubiquitin domain containing.
   
 
 0.878
NME8
NME/NM23 family member 8.
   
 
 0.836
CCDC96
DUF4201 domain-containing protein.
   
 
 0.797
CFAP52
Cilia and flagella associated protein 52.
   
 
 0.772
IQCD
IQ motif containing D.
   
 
 0.764
CCDC189
Coiled-coil domain containing 189.
      
 0.715
TEKT3
Tektin 3.
   
 
 0.703
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.