STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE3DUbiquitin protein ligase E3D. (389 aa)    
Predicted Functional Partners:
RBBP6
RB binding protein 6, ubiquitin ligase.
    
 0.968
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 
 0.765
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.532
CSTF3
Cleavage stimulation factor subunit 3.
      
 0.453
PUDP
Pseudouridine 5'-phosphatase.
      
 0.416
UBE2C
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.414
G3U0R3_LOXAF
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 
 0.414
G3U933_LOXAF
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 
 0.414
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.