Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STARD13Uncharacterized protein. (1124 aa)    
Predicted Functional Partners:
G3U908_LOXAF
Uncharacterized protein.
 
 
   0.902
TBCB
Tubulin folding cofactor B.
    
   0.798
CDC42
Uncharacterized protein.
   
 0.668
MMD
Monocyte to macrophage differentiation associated.
      
 0.626
RHOB
Ras homolog family member B.
   
 0.625
RHOA
Ras homolog family member A.
   
 0.625
RHOC
Uncharacterized protein.
   
 0.625
PDS5B
PDS5 cohesin associated factor B.
   
  
 0.594
CNNM2
Cyclin and CBS domain divalent metal cation transport mediator 2.
      
 0.579
RBBP8
Uncharacterized protein.
      
 0.572
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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