STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBAC2UBA domain containing 2. (345 aa)    
Predicted Functional Partners:
FAF2
Fas associated factor family member 2.
    
 
 0.955
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.942
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.936
AMFR
Autocrine motility factor receptor.
    
 
 0.858
EMC3
ER membrane protein complex subunit 3; Belongs to the EMC3 family.
   
 
 0.855
EMC1
ER membrane protein complex subunit 1.
    
 
 0.838
UBXN8
UBX domain protein 8.
    
 
 0.822
EMC2
ER membrane protein complex subunit 2.
    
 
 0.807
SYVN1
Synoviolin 1.
    
 
 0.775
ERLIN1
ER lipid raft associated 1.
    
 
 0.773
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.