STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3T0G0_LOXAFUncharacterized protein. (474 aa)    
Predicted Functional Partners:
C9orf131
Chromosome 9 open reading frame 131.
      
 0.775
TMCO5A
Transmembrane and coiled-coil domains 5A.
      
 0.709
C12orf40
Chromosome 12 open reading frame 40.
      
 0.706
G3U4Q0_LOXAF
Tubby-like protein; Belongs to the TUB family.
      
 0.594
PKDREJ
Polycystin family receptor for egg jelly.
      
 0.591
MAGEB16
MAGE family member B16.
      
 0.573
RTF2
Replication termination factor 2.
      
 0.516
FAM209B
Uncharacterized protein.
      
 0.516
PKD1L2
PKD_channel domain-containing protein.
      
 0.419
SPATA16
Spermatogenesis associated 16.
      
 0.418
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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