STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORMDL1ORM1-like protein; Negative regulator of sphingolipid synthesis. (153 aa)    
Predicted Functional Partners:
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
    
 
 0.800
SPTSSA
Serine palmitoyltransferase small subunit A.
    
 
 0.774
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
    
 
 0.541
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
    
 
 0.541
G3SNS3_LOXAF
Uncharacterized protein.
   
  
 0.506
PTGER4
Prostaglandin E receptor 4; Belongs to the G-protein coupled receptor 1 family.
      
 0.488
RSL24D1
Ribosomal L24 domain containing 1.
   
  
 0.485
G3SWN4_LOXAF
AMOP domain-containing protein.
    
 
 0.470
ISM1
Isthmin 1.
    
 
 0.470
SACM1L
SAC1 like phosphatidylinositide phosphatase.
    
 
 0.469
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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