STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MTO1Mitochondrial tRNA translation optimization 1. (670 aa)    
Predicted Functional Partners:
GTPBP3
GTP binding protein 3, mitochondrial.
 
 0.971
VPS45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.900
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.859
SUPT7L
SPT7 like, STAGA complex gamma subunit.
   
  
 0.855
CCDC127
Coiled-coil domain containing 127.
      
 0.815
FAM104A
Family with sequence similarity 104 member A.
      
 0.814
MTFMT
Mitochondrial methionyl-tRNA formyltransferase.
  
  
 0.748
AARS1
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
   
  
 0.744
XPNPEP1
X-prolyl aminopeptidase 1; Belongs to the peptidase M24B family.
   
 
 0.739
FAM221B
Family with sequence similarity 221 member B.
      
 0.737
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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