STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTO1Mitochondrial tRNA translation optimization 1. (670 aa)    
Predicted Functional Partners:
GTPBP3
GTP binding protein 3, mitochondrial.
 0.985
VPS45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.900
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.899
YARS1
Tyrosine--tRNA ligase.
  
  
 0.696
SUPT7L
SPT7 like, STAGA complex gamma subunit.
   
  
 0.692
CCDC127
Coiled-coil domain containing 127.
      
 0.685
FAM104A
Family with sequence similarity 104 member A.
      
 0.682
MTFMT
Mitochondrial methionyl-tRNA formyltransferase.
  
  
 0.638
ASB7
Ankyrin repeat and SOCS box containing 7.
    
 
 0.585
PUS1
Pseudouridine synthase 1.
  
  
 0.579
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.