STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PKHD1L1PKHD1 like 1. (4187 aa)    
Predicted Functional Partners:
CDCP2
CUB domain containing protein 2.
    
 0.639
TSPAN11
Tetraspanin.
     
 0.596
G3U3G7_LOXAF
Uncharacterized protein.
   
  
 0.576
LRRC20
Leucine rich repeat containing 20.
    
 0.561
IFT81
Intraflagellar transport 81.
      
 0.560
ITGAL
Integrin subunit alpha L; Belongs to the integrin alpha chain family.
   
 0.542
CD180
CD180 molecule.
    
 0.540
NOL10
Nucleolar protein 10.
      
 0.525
CSMD3
CUB and Sushi multiple domains 3.
      
 0.523
KIAA0513
KIAA0513.
   
  
 0.504
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.