Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL15A1Endostatin domain-containing protein. (122 aa)    
Predicted Functional Partners:
COL8A1
Collagen type VIII alpha 1 chain.
 
  
 0.865
COL9A1
Collagen type IX alpha 1 chain.
 
 
 0.836
COL10A1
Collagen type X alpha 1 chain.
 
 
 0.776
COL9A3
Uncharacterized protein.
 
 
 0.774
COL22A1
Uncharacterized protein.
 
  
 0.722
ITGA5
Integrin subunit alpha 5; Belongs to the integrin alpha chain family.
    
 0.715
COL13A1
Collagen type XIII alpha 1 chain.
 
 
 0.701
PCOLCE
Procollagen C-endopeptidase enhancer.
   
 
 0.659
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
    
 0.637
MMP9
Matrix metallopeptidase 9.
   
 0.614
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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