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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL15A1Endostatin domain-containing protein. (122 aa)    
Predicted Functional Partners:
COL8A1
Collagen type VIII alpha 1 chain.
 
  
 0.856
COL9A1
Collagen type IX alpha 1 chain.
 
  
 0.814
COL9A3
Uncharacterized protein.
 
  
 0.756
COL10A1
Collagen type X alpha 1 chain.
 
  
  0.748
COL22A1
Uncharacterized protein.
 
  
 0.664
COL13A1
Collagen type XIII alpha 1 chain.
 
  
 0.640
COL19A1
Collagen type XIX alpha 1 chain.
 
  
 0.587
PCOLCE
Procollagen C-endopeptidase enhancer.
   
 
 0.562
MMP2
Matrix metallopeptidase 2.
   
 0.528
MMP9
Matrix metallopeptidase 9.
   
 0.516
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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