STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCLRE1BDNA cross-link repair 1B. (546 aa)    
Predicted Functional Partners:
FANCM
FA complementation group M.
   
 0.795
CPSF1
Cleavage and polyadenylation specific factor 1.
   
 0.793
XRCC5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
   
 0.789
SYMPK
Symplekin.
   
 0.774
INTS4
Integrator complex subunit 4.
   
 0.765
EXO1
Exonuclease 1.
   
 0.758
FIP1L1
Factor interacting with PAPOLA and CPSF1.
    
 0.758
LIG1
DNA ligase.
 
 0.747
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.722
CSTF1
Cleavage stimulation factor subunit 1.
   
 0.710
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.