STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYS1Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)    
Predicted Functional Partners:
ARFRP1
ADP ribosylation factor related protein 1.
   
 
 0.875
TP53TG5
TP53 target 5.
      
 0.781
AEBP1
AE binding protein 1.
    
 
 0.694
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
     
 0.648
VPS52
VPS52 subunit of GARP complex.
     
 0.640
RAB6B
RAB6B, member RAS oncogene family.
     
 0.554
COG1
Component of oligomeric golgi complex 1.
   
 
 0.540
ARL3
ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.
     
 0.538
COG3
Component of oligomeric golgi complex 3.
     
 0.537
GCC1
GRIP and coiled-coil domain containing 1.
     
 0.533
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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