STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYS1Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)    
Predicted Functional Partners:
ARFRP1
ADP ribosylation factor related protein 1.
   
 
 0.962
TMF1
TATA element modulatory factor 1.
     
 0.812
ARL1
ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.
     
  0.808
TP53TG5
TP53 target 5.
      
 0.805
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
     
 0.765
AEBP1
AE binding protein 1.
      
 0.744
COG7
Component of oligomeric golgi complex 7.
     
 0.717
VPS53
VPS53 subunit of GARP complex.
     
 0.663
VPS51
VPS51 subunit of GARP complex.
     
 0.662
VPS52
VPS52 subunit of GARP complex.
     
 0.662
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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