STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IKIK cytokine. (555 aa)    
Predicted Functional Partners:
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
   
 0.998
PRPF6
Pre-mRNA processing factor 6.
   
 0.962
MFAP1
Microfibril associated protein 1.
   
 0.952
PRPF38A
Pre-mRNA processing factor 38A.
   
 0.924
WDR55
WD repeat-containing protein 55; Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Belongs to the WD repeat WDR55 family.
 
      0.898
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 0.885
WBP4
WW domain binding protein 4.
   
  0.874
ZMAT2
Zinc finger matrin-type 2.
    
  0.869
SF3B3
Splicing factor 3b subunit 3.
    
  0.793
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.779
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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