STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HARS1Histidyl-tRNA synthetase. (509 aa)    
Predicted Functional Partners:
HARS2
Histidyl-tRNA synthetase 2, mitochondrial.
   
  0.998
YARS1
Tyrosine--tRNA ligase.
  
 
 0.911
EPRS1
Glutamyl-prolyl-tRNA synthetase.
  
 
 0.843
MARS1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.802
EIF2S1
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.751
RBM22
RNA binding motif protein 22.
 
   
  0.740
GARS1
Glycyl-tRNA synthetase.
  
 
 0.728
EIF2AK4
Eukaryotic translation initiation factor 2 alpha kinase 4.
     
 0.719
KARS1
Lysine--tRNA ligase.
  
 
 0.713
VARS1
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.706
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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