STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM98BFamily with sequence similarity 98 member B. (417 aa)    
Predicted Functional Partners:
DDX1
DEAD-box helicase 1.
   
 0.947
RTRAF
RNA transcription, translation and transport factor.
    
 0.947
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
    
 0.931
C2orf49
Chromosome 2 open reading frame 49.
   
 0.900
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.686
KDM6A
Lysine demethylase 6A.
   
 0.661
TRPT1
tRNA phosphotransferase 1.
      
 0.645
C15orf41
Chromosome 15 open reading frame 41.
    
 
 0.528
RANBP2
RAN binding protein 2.
    
 0.481
KHSRP
KH-type splicing regulatory protein.
    
 
 0.440
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.