STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3T1C9_LOXAFUncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (179 aa)    
Predicted Functional Partners:
SCFD2
Uncharacterized protein.
 
      0.900
ZW10
Zw10 kinetochore protein.
    
 
 0.829
RINT1
RAD50 interactor 1.
   
 
 0.792
STX18
Syntaxin 18.
    
 
 0.765
NBAS
Sec39 domain-containing protein.
    
 
 0.651
G3U4J3_LOXAF
Nbas_N domain-containing protein.
    
 
 0.651
SCFD1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.607
USE1
Unconventional SNARE in the ER 1.
   
   0.545
COG4
Component of oligomeric golgi complex 4.
      
 0.489
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
   
   0.479
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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