STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCDH15Protocadherin related 15. (1408 aa)    
Predicted Functional Partners:
CDH23
Cadherin related 23.
   
0.982
USH1C
USH1 protein network component harmonin.
   
 
 0.960
RELCH
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
   
    0.953
LHFPL5
LHFPL tetraspan subfamily member 5.
   
 0.914
CDHR2
Cadherin related family member 2.
   
 0.853
USH1G
USH1 protein network component sans.
   
 0.844
TMC1
Transmembrane channel-like protein.
   
 0.813
NUDCD1
NudC domain containing 1.
    
 
 0.794
SLC26A5
Prestin; Motor protein that converts auditory stimuli to length changes in outer hair cells and mediates sound amplification in the mammalian hearing organ; Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.
      
 0.774
STRC
Stereocilin.
    
 0.747
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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