STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CNPPD1Cyclin Pas1/PHO80 domain containing 1. (411 aa)    
Predicted Functional Partners:
LIG4
DNA ligase.
    
 0.730
XRCC5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.707
GPCPD1
Glycerophosphocholine phosphodiesterase 1.
    
 0.700
XRCC6
Ku domain-containing protein.
    
 0.578
G3TSL5_LOXAF
Uncharacterized protein.
    
 0.578
PAXX
PAXX non-homologous end joining factor.
    
 
 0.482
SLC23A3
Solute carrier family 23 member 3.
 
      0.473
JUN
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
   
 0.469
JUNB
JunB proto-oncogene, AP-1 transcription factor subunit.
   
 0.469
CDK14
Cyclin dependent kinase 14; Belongs to the protein kinase superfamily.
    
 0.461
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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