STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTF2Replication termination factor 2. (306 aa)    
Predicted Functional Partners:
YARS1
Tyrosine--tRNA ligase.
    
   0.702
TRMT1
tRNA (guanine(26)-N(2))-dimethyltransferase.
    
   0.685
PKDREJ
Polycystin family receptor for egg jelly.
   
  
 0.601
G3U4Q0_LOXAF
Tubby-like protein; Belongs to the TUB family.
   
  
 0.600
TMCO5A
Transmembrane and coiled-coil domains 5A.
   
  
 0.598
MAGEB16
MAGE family member B16.
      
 0.592
G3UIJ0_LOXAF
Ion_trans domain-containing protein.
      
 0.549
SPATA16
Spermatogenesis associated 16.
      
 0.546
G3T0G0_LOXAF
Uncharacterized protein.
      
 0.516
C12orf40
Chromosome 12 open reading frame 40.
      
 0.506
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.