STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTF2Replication termination factor 2. (306 aa)    
Predicted Functional Partners:
G3U4Q0_LOXAF
Tubby-like protein; Belongs to the TUB family.
   
  
 0.464
PKDREJ
Polycystin family receptor for egg jelly.
   
  
 0.460
CCDC130
Coiled-coil domain containing 130.
      
 0.451
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
  
 0.448
MAGEB16
MAGE family member B16.
      
 0.445
G3UIJ0_LOXAF
Ion_trans domain-containing protein.
      
 0.440
UBXN7
UBX domain-containing protein 7.
      
 0.420
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
      
 0.406
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.