STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDCD11Programmed cell death 11. (1835 aa)    
Predicted Functional Partners:
UTP20
UTP20 small subunit processome component.
   
 0.998
WDR46
WD repeat domain 46.
   
 0.997
NOP14
NOP14 nucleolar protein.
   
 0.997
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.995
HEATR1
U3snoRNP10 domain-containing protein.
   
 0.994
DDX52
DExD-box helicase 52.
   
 0.994
UTP4
UTP4 small subunit processome component.
   
 0.992
NOL6
Nucleolar protein 6.
   
 0.992
NOC4L
Nucleolar complex associated 4 homolog.
   
 0.992
DCAF13
DDB1 and CUL4 associated factor 13.
   
 0.989
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.