STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD11Programmed cell death 11. (1835 aa)    
Predicted Functional Partners:
UTP4
UTP4 small subunit processome component.
   
 0.999
HEATR1
U3snoRNP10 domain-containing protein.
   
 0.999
PWP2
WD_REPEATS_REGION domain-containing protein.
   
 
 0.999
BMS1
BMS1 ribosome biogenesis factor.
   
 
 0.999
RPS9
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
  
 0.999
WDR46
WD repeat domain 46.
   
 0.999
UTP20
UTP20 small subunit processome component.
   
 0.999
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
NOP14
NOP14 nucleolar protein.
   
 0.999
NOC4L
Nucleolar complex associated 4 homolog.
   
 0.999
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.