STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NPTX2Neuronal pentraxin 2. (432 aa)    
Predicted Functional Partners:
NPTXR
Chromo domain-containing protein.
   
 
 0.686
SCGN
Secretagogin, EF-hand calcium binding protein.
     
 0.577
TOM1L1
Target of myb1 like 1 membrane trafficking protein; Belongs to the TOM1 family.
      
 0.561
RASSF5
Ras association domain family member 5.
      
 0.559
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
   
 
 0.545
RING1
Ring finger protein 1.
    
 0.529
RNF2
RING-type domain-containing protein.
    
 0.529
G3UB93_LOXAF
RAWUL domain-containing protein.
    
 0.529
ITGA2B
Integrin subunit alpha 2b; Belongs to the integrin alpha chain family.
      
 0.521
RCN2
Reticulocalbin 2.
    
 
 0.509
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.