STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TACC1Transforming acidic coiled-coil containing protein 1. (817 aa)    
Predicted Functional Partners:
CKAP5
Cytoskeleton associated protein 5.
    
 
 0.683
G3U7T5_LOXAF
TACC_C domain-containing protein.
    
 
0.531
FGFR3
Fibroblast growth factor receptor.
    
 0.529
CCDC125
Coiled-coil domain containing 125.
      
 0.523
CEP120
Centrosomal protein 120.
    
 0.491
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.468
G3SVS9_LOXAF
TACC_C domain-containing protein.
    
 
0.457
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.448
RASL11B
RAS like family 11 member B.
    
 0.439
FAM110A
Family with sequence similarity 110 member A.
      
 0.439
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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