Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SF3B4Splicing factor 3b subunit 4. (425 aa)    
Predicted Functional Partners:
SF3B2
Splicing factor 3b subunit 2.
   
 0.999
SF3B1
Splicing factor 3b subunit 1.
    
 0.997
SF3B3
Splicing factor 3b subunit 3.
   
 0.997
SF3A2
Splicing factor 3a subunit 2.
   
 0.997
PHF5A
PHD finger protein 5A.
   
 0.996
SF3B6
Splicing factor 3b subunit 6.
    
 0.996
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.996
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.987
DDX42
DEAD-box helicase 42.
    
 0.983
DHX15
DEAH-box helicase 15.
   
 0.977
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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